hmwgsqc2 (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:QC and Merged reads: Sequencing centers deposited metagenome sequence to SRA where human DNA was removed. HMP DACC downloaded metagenomes from the SRA. The SRA native format read files were converted to FASTQ, and were concatenated per read direction to create a single pair of FASTQ files for each sample. FASTQs were converted to unaligned BAM and exact duplicates removed. All reads were trimmed and length filtered. WMS reads and accompanying metadata are available at the SRA and dbGaP under two studies: SRP002163 and SRP056641.

Abbreviation:hmwgsqc2

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	hmwgsqcv2 SRS893365 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS893365 sample to SRA whe...
	hmwgsqcv2 SRS146874 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS146874 sample to SRA whe...
	hmwgsqcv2 SRS098571 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS098571 sample to SRA whe...
	hmwgsqcv2 SRS015640 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS015640 sample to SRA whe...
	hmwgsqcv2 SRS104287 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS104287 sample to SRA whe...
	hmwgsqcv2 SRS014465 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS014465 sample to SRA whe...
	hmwgsqcv2 SRS142980 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS142980 sample to SRA whe...
	hmwgsqcv2 SRS054956 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS054956 sample to SRA whe...
	hmwgsqcv2 SRS017439 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS017439 sample to SRA whe...

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

hmwgsqcv2 SRS893365

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS893365 sample to SRA whe...

hmwgsqcv2 SRS146874

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS146874 sample to SRA whe...

hmwgsqcv2 SRS098571

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS098571 sample to SRA whe...

hmwgsqcv2 SRS015640

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS015640 sample to SRA whe...

hmwgsqcv2 SRS104287

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS104287 sample to SRA whe...

hmwgsqcv2 SRS014465

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS014465 sample to SRA whe...

hmwgsqcv2 SRS142980

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS142980 sample to SRA whe...

hmwgsqcv2 SRS054956

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS054956 sample to SRA whe...

hmwgsqcv2 SRS017439

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS017439 sample to SRA whe...

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.