hmwgsqcv2 SRS104287 (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:QC and Merged reads: Sequencing center deposited metagenome sequence for SRS104287 sample to SRA where human DNA was removed. HMP DACC downloaded metagenome from the SRA. The SRA native format read files were converted to FASTQ, and were concatenated per read direction to create a single pair of FASTQ files for SRS104287. FASTQs were converted to unaligned BAM and exact duplicates removed. All reads were trimmed and length filtered. WMS reads and accompanying metadata are available at the SRA and dbGaP under two studies: SRP002163 and SRP056641.

Abbreviation:hmwgsqcv2_SRS104287

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	hmwgsqc2 Collection (Entity type)	QC and Merged reads: Sequencing centers deposited metagenome sequence to SRA where human DNA was rem...
	HHS 765195863 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS104287 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS104287 hmwgsqcv2.tar.bz2 File (Entity type)	A 6.38 GB file from HMP produced from OBI:0002623 as part of the HHS project

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

hmwgsqc2

Collection (Entity type)

QC and Merged reads: Sequencing centers deposited metagenome sequence to SRA where human DNA was rem...

HHS 765195863

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS104287

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS104287 hmwgsqcv2.tar.bz2

File (Entity type)

A 6.38 GB file from HMP produced from OBI:0002623 as part of the HHS project

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