HHS (Project)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Description:The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved characterization of the normal microbiota from 300 healthy adults. It entailed sampling from 18 body sites in women and 15 in men (excluding three vaginal sites) distributed among five major body areas. The samples were subjected to 454 pyrosequencing for 16S rRNA gene analysis to characterize the complexity of microbial communities. For a subset of the samples, Illumina whole metagenome sequencing was done for taxonomic profiling, metabolic profiling, gene finding, and gene annotation. Numerous additional analyses were performed on the data.

Abbreviation:HHS

Results found

Linked to

	Label	Description
	hmcarg2 Collection (Entity type)	Assembled contig alignments to reference genomes: Contigs that resulted from assembly of whole metag...
	hmrarg2 phylum all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing phylum assignments based on read abundance from alignment of...
	hmrarg2 species all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing species assignments based on read abundance from alignment o...
	hmrarg2 order all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing order assignments based on read abundance from alignment of ...
	hmrarg2 family all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing family assignments based on read abundance from alignment of...
	hmrarg2 class all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing class assignments based on read abundance from alignment of ...
	hmrarg2 strain all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing strain assignments based on read abundance from alignment of...
	hmrarg2 genus all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing genus assignments based on read abundance from alignment of ...
	species all samples relative taxonomic abundance.txt File (Entity type)	A 6.30 MB file from HMP produced from OBI:0002623 as part of the HHS project
	genus all samples relative taxonomic abundance.txt File (Entity type)	A 1.65 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmcarg2

Collection (Entity type)

Assembled contig alignments to reference genomes: Contigs that resulted from assembly of whole metag...

hmrarg2 phylum all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing phylum assignments based on read abundance from alignment of...

hmrarg2 species all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing species assignments based on read abundance from alignment o...

hmrarg2 order all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing order assignments based on read abundance from alignment of ...

hmrarg2 family all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing family assignments based on read abundance from alignment of...

hmrarg2 class all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing class assignments based on read abundance from alignment of ...

hmrarg2 strain all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing strain assignments based on read abundance from alignment of...

hmrarg2 genus all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing genus assignments based on read abundance from alignment of ...

species all samples relative taxonomic abundance.txt

File (Entity type)

A 6.30 MB file from HMP produced from OBI:0002623 as part of the HHS project

genus all samples relative taxonomic abundance.txt

File (Entity type)

A 1.65 MB file from HMP produced from OBI:0002623 as part of the HHS project

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

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