hmcgi2 (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Coassembly annotated gene index: Structural annotation of co-assembled contigs (refer "hmcasm2" collection) was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available. Annotation output is a gff3 file for each co-assembly.

Abbreviation:hmcgi2

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	hmcgi2 159207311 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_159207311_supragingival_plaque" collec...
	hmcgi2 765013792 posterior fornix Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_765013792_posterior_fornix" collection...
	hmcgi2 160502038 tongue dorsum Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_160502038_tongue_dorsum" collection) w...
	hmcgi2 160582958 buccal mucosa Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_160582958_buccal_mucosa" collection) w...
	hmcgi2 160319967 tongue dorsum Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_160319967_tongue_dorsum" collection) w...
	hmcgi2 508703490 tongue dorsum Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_508703490_tongue_dorsum" collection) w...
	hmcgi2 159207311 stool Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_159207311_stool" collection) was perfo...
	hmcgi2 159389382 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_159389382_supragingival_plaque" collec...
	hmcgi2 765155402 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_765155402_supragingival_plaque" collec...

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

hmcgi2 159207311 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_159207311_supragingival_plaque" collec...

hmcgi2 765013792 posterior fornix

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_765013792_posterior_fornix" collection...

hmcgi2 160502038 tongue dorsum

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_160502038_tongue_dorsum" collection) w...

hmcgi2 160582958 buccal mucosa

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_160582958_buccal_mucosa" collection) w...

hmcgi2 160319967 tongue dorsum

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_160319967_tongue_dorsum" collection) w...

hmcgi2 508703490 tongue dorsum

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_508703490_tongue_dorsum" collection) w...

hmcgi2 159207311 stool

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_159207311_stool" collection) was perfo...

hmcgi2 159389382 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_159389382_supragingival_plaque" collec...

hmcgi2 765155402 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_765155402_supragingival_plaque" collec...

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

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