hmcgi2 765013792 posterior fornix (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Structural annotation of co-assembled contigs (refer "hmcasm2_765013792_posterior_fornix" collection) was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available. Annotation output is a gff3 file.

Abbreviation:hmcgi2_765013792_posterior_fornix

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	hmcgi2 Collection (Entity type)	Coassembly annotated gene index: Structural annotation of co-assembled contigs (refer "hmcasm2" coll...
	HHS 765013792 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS018769 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS142521 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS146924 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	765013792.pf.gff3.bz2 File (Entity type)	A 1.10 MB file from HMP produced from OBI:0002623 as part of the HHS project

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

hmcgi2

Collection (Entity type)

Coassembly annotated gene index: Structural annotation of co-assembled contigs (refer "hmcasm2" coll...

HHS 765013792

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS018769

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS142521

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS146924

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

765013792.pf.gff3.bz2

File (Entity type)

A 1.10 MB file from HMP produced from OBI:0002623 as part of the HHS project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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