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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

rummageo gene perturbations (Gene Set Library)

Project: Library of Integrated Network-based Cellular Signatures

Asset: Asset Page

Gene coverage: 30,768

Gene sets: 4,539

Download: https://cfde-drc.s3.amazonaws.com/LINCS/XMT/2024-12-19/rummageo_gene_perturbations.gmt

Description: A gene set library provided by LINCS

Gene sets

Label	Description
GSE158834 ADIPOR2 knockout HEK293 7 v 3 human up Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE214505 AKR1B1 knockdown A-549 3 v 1 human dn Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE218097 SOX10 overexpression glial cell 2 v 1 human up Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE226525 GSE226527 HNRNPH2 knockout 4 v 8 human dn Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE252944 AKT inhibition 7 v 9 human dn Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE214505 AKR1B1 knockdown A-549 3 v 2 human dn Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 11 v 12 human dn Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE190937 AHCY MAT2A knockout Rael 4 v 1 human up Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE193993 SSTR2 knockout 0 v 2 human up Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS
GSE115384 CELSR2 knockdown 2 v 1 human up Gene Set (Entity type)	A gene set from rummageo gene perturbations provided by LINCS

GSE158834 ADIPOR2 knockout HEK293 7 v 3 human up
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE214505 AKR1B1 knockdown A-549 3 v 1 human dn
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE218097 SOX10 overexpression glial cell 2 v 1 human up
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE226525 GSE226527 HNRNPH2 knockout 4 v 8 human dn
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE252944 AKT inhibition 7 v 9 human dn
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE214505 AKR1B1 knockdown A-549 3 v 2 human dn
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 11 v 12 human dn
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE190937 AHCY MAT2A knockout Rael 4 v 1 human up
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE193993 SSTR2 knockout 0 v 2 human up
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

GSE115384 CELSR2 knockdown 2 v 1 human up
Gene Set (Entity type)
A gene set from rummageo gene perturbations provided by LINCS

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