The Common Fund’s Library of Integrated Network-based Cellular Signatures (LINCS) program developed a library that catalogs changes that occur when different types of cells are exposed to a variety of agents that disrupt normal cellular functions, called “perturbagens.” This libr...read more
Metadata and Processed Data Files
C2M2
1 Current File(s) | 10 Archived File(s)
Modified 9/18/2023
Current
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| datapackage.zip | LINCS | 169.2 Mb | 9/18/2023 |
Archived
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| datapackage.zip | LINCS | 166.0 Mb | 6/15/2023 | ||
| datapackage.zip | LINCS | 166.7 Mb | 3/21/2023 | ||
| datapackage.zip | LINCS | 166.2 Mb | 12/2/2022 | ||
| datapackage.zip | LINCS | 165.5 Mb | 9/14/2022 | ||
| datapackage.zip | LINCS | 164.2 Mb | 6/20/2022 | ||
| datapackage.zip | LINCS | 171.1 Mb | 4/14/2022 | ||
| datapackage.zip | LINCS | 171.1 Mb | 1/11/2022 | ||
| datapackage.zip | LINCS | 131.1 Mb | 9/29/2021 | ||
| datapackage.zip | LINCS | 141.3 Mb | 6/2/2021 | ||
| datapackage.zip | LINCS | 28.1 Mb | 3/24/2021 |
XMT
2 Current File(s) | 4 Archived File(s)
Modified 12/13/2022
Current
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| LINCS_L1000_CRISPR_KO_Consensus_Sigs.gmt | DRC | 14.9 Mb | 12/13/2022 | ||
| LINCS_L1000_Chem_Pert_Consensus_Sigs.gmt | DRC | 15.6 Mb | 12/13/2022 |
Archived
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| LINCS_L1000_Ligand_Perturbations_up.gmt | DRC | 87.4 Kb | 6/6/2022 | ||
| LINCS_L1000_Chem_Pert_up.gmt | DRC | 15.5 Mb | 6/6/2022 | ||
| LINCS_L1000_Ligand_Perturbations_down.gmt | DRC | 93.0 Kb | 6/6/2022 | ||
| LINCS_L1000_Chem_Pert_down.gmt | DRC | 13.4 Mb | 6/6/2022 |
Attribute Tables
2 Current File(s) | 0 Archived File(s)
Modified 3/29/2024
Current
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| LINCS_L1000_CRISPR_KO_Perturbation_Consensus_CD_Sigs.h5 | DRC | 317.5 Mb | 3/29/2024 | ||
| LINCS_L1000_Chemical_Perturbation_Consensus_CD_Sigs.h5 | DRC | 1.4 Gb | 3/28/2024 |
Archived
None Available
Knowledge Graph Assertions
1 Current File(s) | 1 Archived File(s)
Modified 5/8/2024
Current
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| LINCS.zip | DRC | 11.6 Mb | 5/8/2024 |
Archived
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| LINCS.edges.csv | DRC | 54.6 Mb | 10/26/2023 |
Interoperability Assets
ETL Scripts
2 Current File(s) | 0 Archived File(s)
Modified 5/22/2022
Current
| Name | Creator | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|
| build_file_lincs2021.py | DRC | 6/23/2021 | ||
| process_mcf10a_c2m2.py | DRC | 5/22/2022 |
Archived
None Available
API Specifications
7 Current File(s) | 1 Archived File(s)
Modified 1/31/2023
Current
| Name | Creator | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|
Enrichr (SmartAPI) | DRC | 1/31/2023 | ||
FAIRshake API v2 (SmartAPI) | DRC | 4/5/2022 | ||
Harmonizome (SmartAPI) | DRC | 1/31/2023 | ||
L1000CDS2 (SmartAPI) | DRC | 1/31/2023 | ||
L1000FWD (SmartAPI) | DRC | 1/31/2023 | ||
SigCom LINCS Data (SmartAPI) | DRC | 5/22/2022 | ||
SigCom LINCS Metadata (SmartAPI) | DRC | 5/22/2022 |
Archived
| Name | Creator | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|
FAIRshake (SmartAPI) | DRC | 8/7/2018 |
Entity Pages
4 Current File(s) | 0 Archived File(s)
Modified 3/8/2024
PWB Metanodes
3 Current File(s) | 1 Archived File(s)
Modified 2/26/2024
Current
| Name | Creator | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|
| LINCS L1000 Reverse Search | DRC | 7/19/2023 | ||
| SigCom LINCS Gene Set Search Results | DRC | 2/7/2024 | ||
| SigCom LINCS Signature Search Results | DRC | 2/7/2024 |
Archived
| Name | Creator | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|
| LINCS L1000 Reverse Search | DRC | 2/26/2024 |
Chatbot Specifications
0 Available Files
Current
None Available
Archived
None Available
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