GSE168171 GSE168173 DDX41 knockdown U2OS 0 v 1 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE168171_GSE168173_DDX41 knockdown_U2OS_0_v_1_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE168171_GSE168173_DDX41 knockdown_U2OS_0_v_1_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE168171_GSE168173_DDX41 knockdown_U2OS_0_v_1_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE168171_GSE168173_DDX41 knockdown_U2OS_0_v_1_human_up.

Results found

Linked to

	Label	Description
	CXCL8 Gene (Entity type)	C-X-C motif chemokine ligand 8
	AKR1C3 Gene (Entity type)	aldo-keto reductase family 1 member C3
	CLU Gene (Entity type)	clusterin
	ATF3 Gene (Entity type)	activating transcription factor 3
	DNAJA3 Gene (Entity type)	DnaJ heat shock protein family (Hsp40) member A3
	AKR1C2 Gene (Entity type)	aldo-keto reductase family 1 member C2
	TM4SF1 Gene (Entity type)	transmembrane 4 L six family member 1
	MAGEA6 Gene (Entity type)	MAGE family member A6
	AMIGO2 Gene (Entity type)	adhesion molecule with Ig like domain 2
	AREG Gene (Entity type)	amphiregulin

CXCL8

Gene (Entity type)

C-X-C motif chemokine ligand 8

AKR1C3

Gene (Entity type)

aldo-keto reductase family 1 member C3

CLU

Gene (Entity type)

clusterin

ATF3

Gene (Entity type)

activating transcription factor 3

DNAJA3

Gene (Entity type)

DnaJ heat shock protein family (Hsp40) member A3

AKR1C2

Gene (Entity type)

aldo-keto reductase family 1 member C2

TM4SF1

Gene (Entity type)

transmembrane 4 L six family member 1

MAGEA6

Gene (Entity type)

MAGE family member A6

AMIGO2

Gene (Entity type)

adhesion molecule with Ig like domain 2

AREG

Gene (Entity type)

amphiregulin

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.