CFDE Data Portal | File Format

File Format

	Label	Description
	image format File Format (Entity type)	Format used for images and image metadata.
	FASTA File Format (Entity type)	FASTA format including NCBI-style IDs.
	BIOM format File Format (Entity type)	The BIological Observation Matrix (BIOM) is a format for representing biological sample by observati...
	FASTQ File Format (Entity type)	FASTQ short read format ignoring quality scores.
	MAT File Format (Entity type)	Binary format used by MATLAB files to store workspace variables
	binary format File Format (Entity type)	Binary format.
	GFF3 File Format (Entity type)	Generic Feature Format version 3 (GFF3) of sequence features.
	Thermo RAW File Format (Entity type)	Proprietary file format for mass spectrometry data from Thermo Scientific.
	JSON File Format (Entity type)	JavaScript Object Notation format; a lightweight, text-based format to represent tree-structured dat...
	TIFF File Format (Entity type)	A versatile bitmap format.

image format

Format used for images and image metadata.

FASTA

FASTA format including NCBI-style IDs.

BIOM format

The BIological Observation Matrix (BIOM) is a format for representing biological sample by observati...

FASTQ

FASTQ short read format ignoring quality scores.

MAT

Binary format used by MATLAB files to store workspace variables

binary format

Binary format.

GFF3

Generic Feature Format version 3 (GFF3) of sequence features.

Thermo RAW

Proprietary file format for mass spectrometry data from Thermo Scientific.

JSON

JavaScript Object Notation format; a lightweight, text-based format to represent tree-structured dat...

TIFF

A versatile bitmap format.

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025