hmsmcp1 (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Shotgun MetaPHlAn Community Profiling: Reads generated by Illumina wgs sequencing were analyzed by MetaPhlAn, which infers a table of relative abundances for all taxonomic levels (from phyla to species) for bacteria and archaea. The MetaPhlAn classifier compares each read to a pre-computed catalog of unique clade-specific markers in order to identify high-confidence matches. The classifier normalizes the total number of reads in each clade by the nucleotide length of its markers and provides the relative abundance of each taxonomic unit. Microbial reads belonging to clades with no sequenced genomes available are reported as an "unclassified" subclade of the closest ancestor with available sequence data.

Abbreviation:hmsmcp1

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	HHS 159753524 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HMP.ab.txt.bz2 File (Entity type)	A 322 KB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 763577454 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 763901136 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 765337473 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 160502038 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 160319967 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 765094712 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 763961826 Subject (Entity type)	A subject from HMP produced as part of the HHS project

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

HHS 159753524

Subject (Entity type)