hmgoi1 (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Genes of Interest: Genes of interest were profiled using sequence databases that were compiled for transporters, antibiotic resistance genes, virulence factors, carbohydrate-active enzymes and other functional categories. BlastX searches were performed for reads against these databases. Results were processed using the HUMAnN pipeline. HUMAnN was run using Illumina reads from 743 samples as input. For each sample, we provide an abundance file indicating the abundance of each gene (ie how many copies are present in the community) as well as concatenated summary files by functional category containing all sample output.

Abbreviation:hmgoi1

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	hmgoi1 carbohydrate active enzymes Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...
	hmgoi1 viruses Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for virus genes.
	hmgoi1 virulence factors Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for virulence_factors.
	hmgoi1 antibiotic resistance genes Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for antibiotic_resistance_gene...
	hmgoi1 metacyc Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for metacyc/enzymes.
	hmgoi1 phage Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for phage genes.
	hmgoi1 proteases Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for proteases.
	hmgoi1 synthetic gene clusters Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for synthetic_gene_clusters.
	hmgoi1 transporters Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for transporters.

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

hmgoi1 carbohydrate active enzymes

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...

hmgoi1 viruses

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for virus genes.

hmgoi1 virulence factors

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for virulence_factors.

hmgoi1 antibiotic resistance genes

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for antibiotic_resistance_gene...

hmgoi1 metacyc

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for metacyc/enzymes.

hmgoi1 phage

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for phage genes.

hmgoi1 proteases

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for proteases.

hmgoi1 synthetic gene clusters

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for synthetic_gene_clusters.

hmgoi1 transporters

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for transporters.

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.