hmrarg2 (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Read alignments to reference genomes: Collection includes alignments of individual raw reads of all samples to MetaRef reference genomes. It also contains unaligned reads and summary files from all samples with taxonomic information.

Abbreviation:hmrarg2

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	hmrarg2 phylum all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing phylum assignments based on read abundance from alignment of...
	hmrarg2 species all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing species assignments based on read abundance from alignment o...
	hmrarg2 order all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing order assignments based on read abundance from alignment of ...
	hmrarg2 family all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing family assignments based on read abundance from alignment of...
	hmrarg2 class all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing class assignments based on read abundance from alignment of ...
	hmrarg2 strain all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing strain assignments based on read abundance from alignment of...
	hmrarg2 genus all samples relative taxonomic abundance Collection (Entity type)	Summary file for all samples containing genus assignments based on read abundance from alignment of ...
	hmrarg2 SRS075878 Collection (Entity type)	Unaligned raw reads resulting from alignment of reads from SRS075878 sample to MetaRef reference gen...
	hmrarg2 SRS014126 Collection (Entity type)	Unaligned raw reads resulting from alignment of reads from SRS014126 sample to MetaRef reference gen...

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

hmrarg2 phylum all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing phylum assignments based on read abundance from alignment of...

hmrarg2 species all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing species assignments based on read abundance from alignment o...

hmrarg2 order all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing order assignments based on read abundance from alignment of ...

hmrarg2 family all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing family assignments based on read abundance from alignment of...

hmrarg2 class all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing class assignments based on read abundance from alignment of ...

hmrarg2 strain all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing strain assignments based on read abundance from alignment of...

hmrarg2 genus all samples relative taxonomic abundance

Collection (Entity type)

Summary file for all samples containing genus assignments based on read abundance from alignment of ...

hmrarg2 SRS075878

Collection (Entity type)

Unaligned raw reads resulting from alignment of reads from SRS075878 sample to MetaRef reference gen...

hmrarg2 SRS014126

Collection (Entity type)

Unaligned raw reads resulting from alignment of reads from SRS014126 sample to MetaRef reference gen...

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Community

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.