assay for transposase-accessible chromatin using sequencing (Assay Type)

Synonyms:ATAC-seq, ATAC-seq assay

Id:OBI:0002039

Description:An assay to capture the location of open chromatin, DNA-binding proteins, individual nucleosomes and chromatin compaction at nucleotide resolution by Tn5 transposase insertion.

Results found

Linked to

	Label	Description
	MDD ATACseq Level3.csv File (Entity type)	A 88.3 MB file from LINCS produced from OBI:0002039 as part of the MCF10A MDD project
	LDS-1502.tar.gz File (Entity type)	A 116 KB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project
	LDS-1501.tar.gz File (Entity type)	A 71.3 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project
	LDS-1401.tar.gz File (Entity type)	A 832 KB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project
	LDS-1549.tar.gz File (Entity type)	A 537 KB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project
	LDS-1400.tar.gz File (Entity type)	A 22.0 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project
	LDS-1548.tar.gz File (Entity type)	A 28.7 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project
	LDS-1354.tar.gz File (Entity type)	A 29.6 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

MDD ATACseq Level3.csv

File (Entity type)

A 88.3 MB file from LINCS produced from OBI:0002039 as part of the MCF10A MDD project

LDS-1502.tar.gz

File (Entity type)

A 116 KB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

LDS-1501.tar.gz

File (Entity type)

A 71.3 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

LDS-1401.tar.gz

File (Entity type)

A 832 KB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

LDS-1549.tar.gz

File (Entity type)

A 537 KB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

LDS-1400.tar.gz

File (Entity type)

A 22.0 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

LDS-1548.tar.gz

File (Entity type)

A 28.7 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

LDS-1354.tar.gz

File (Entity type)

A 29.6 MB file from LINCS produced from OBI:0002039 as part of the LINCS phase 2 project

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.