hmgi1 (Collection)

Id Namespace:

HMP default ID namespace

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Gene Index: The collection contains gene index files generated by running gene predictions and annotations on assemblies from individual sample (690 samples) reads, after quality control screening. Gene sequence and annotation is provided in gff3 format, nucleotide and protein multi-FASTA formats with one set of files per sample. Functional attributes assigned to each gene prediction include gene name, gene symbol, Gene Ontology (GO) assignments and Enzyme Commission (EC) numbers. Annotations per sample were parsed and counts generated for each annotation attribute. Samples were then categorized by body site to provide a summary of annotation attributes by site.

Abbreviation:hmgi1

Results found

Linked to

	Label	Description
	HHS Project (Entity type)	The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...
	HHS 159753524 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	sample summary.xls File (Entity type)	A 116 KB file from HMP produced from OBI:0002623 as part of the HHS project
	site summary.pdf File (Entity type)	A 20.9 KB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 763577454 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 763901136 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 765337473 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 160502038 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 160319967 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 765094712 Subject (Entity type)	A subject from HMP produced as part of the HHS project

HHS

Project (Entity type)

The Healthy Human Subjects project is part of phase 1 of the Human Micrbiome Project and involved ch...

HHS 159753524

Subject (Entity type)

A subject from HMP produced as part of the HHS project

sample summary.xls

File (Entity type)

A 116 KB file from HMP produced from OBI:0002623 as part of the HHS project

site summary.pdf

File (Entity type)

A 20.9 KB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 763577454

Subject (Entity type)

A subject from HMP produced as part of the HHS project

HHS 763901136

Subject (Entity type)

A subject from HMP produced as part of the HHS project

HHS 765337473

Subject (Entity type)

A subject from HMP produced as part of the HHS project

HHS 160502038

Subject (Entity type)

A subject from HMP produced as part of the HHS project

HHS 160319967

Subject (Entity type)

A subject from HMP produced as part of the HHS project

HHS 765094712

Subject (Entity type)

A subject from HMP produced as part of the HHS project

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.