Berberine (Compound)

Description: A compound in the knowledge graph

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CFDE DD-Knowledge Graph

The CFDE Data Distillery Knowledge Graph contains entities and relationships across the CFDE. View Berberine's neighborhood in the knowledge graph.

Source	Relation	Target	Evidence
Berberine Compound (Entity type)	Positively regulates Knowledge Graph Relation (Entity type)	HERPUD1 Gene (Entity type)	0.005452728
Berberine Compound (Entity type)	Positively regulates Knowledge Graph Relation (Entity type)	GAD1 Gene (Entity type)	0.0042698532
Berberine Compound (Entity type)	Positively regulates Knowledge Graph Relation (Entity type)	E2F2 Gene (Entity type)	0.0070000733
Berberine Compound (Entity type)	Negatively regulates Knowledge Graph Relation (Entity type)	PLXNC1 Gene (Entity type)	-0.004917026
Berberine Compound (Entity type)	Negatively regulates Knowledge Graph Relation (Entity type)	RTN1 Gene (Entity type)	-0.0046769674
Berberine Compound (Entity type)	Positively regulates Knowledge Graph Relation (Entity type)	SLC5A6 Gene (Entity type)	0.004290546
2-{2-[4-(2-Methoxy-phenyl)-piperazin-1-yl]-ethyl}-4,4-dimethyl-4H-isoquinoline-1,3-dione Compound (Entity type)	In similarity relationship with Knowledge Graph Relation (Entity type)	Berberine Compound (Entity type)	0.2462315261363983
Berberine Compound (Entity type)	Negatively regulates Knowledge Graph Relation (Entity type)	PEG10 Gene (Entity type)	-0.0077073523
Tasquinimod Compound (Entity type)	In similarity relationship with Knowledge Graph Relation (Entity type)	Berberine Compound (Entity type)	0.4751890003681183
Berberine Compound (Entity type)	Negatively regulates Knowledge Graph Relation (Entity type)	ARNT2 Gene (Entity type)	-0.004925508

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	Source	Relation	Target	Evidence
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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.