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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.

File has loop (Knowledge Graph Relation)

Assertions: 215,821

Description: A relationship in the knowledge graph

Knowledge Graph Assertions

Source	Relation	Target
in situ Hi-C on HFFc6 cells.HFFc6.protocol variations.Dekker 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFIQ48U7UJ.chr3.127650000-127655000.chr3.127960000-127965000 CUI 4DN Loop (Entity type)
in situ Hi-C on HCT116 cells (containing AID-tagged WAPL) auxin treated.HCT116 - perturbed.WAPL Knockdown.Cremins 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFILP7BD5H.chr16.48700000-48740000.chr16.49100000-49140000 CUI 4DN Loop (Entity type)
in situ Hi-C on H1-ESC cells.H1-ESC.conservative calls.Cremins 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFIEEF14ST.chr8.14450000-14470000.chr8.14850000-14870000 CUI 4DN Loop (Entity type)
in situ Hi-C on HFFc6 cells.HFFc6.protocol variations.Dekker 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFIQ48U7UJ.chr5.136685000-136690000.chr5.136770000-136775000 CUI 4DN Loop (Entity type)
in situ Dnase Hi-C on fetal heart samples.Heart_Tissue.Clustered 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFIAL6BHR2.chr8.117600000-117625000.chr8.118075000-118100000 CUI 4DN Loop (Entity type)
in situ Hi-C on HCT116 cells (containing AID-tagged WAPL) auxin treated.HCT116 - perturbed.WAPL Knockdown.Cremins 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFILP7BD5H.chr4.41680000-41720000.chr4.41860000-41900000 CUI 4DN Loop (Entity type)
Micro-C on H1 cells differentiated to definitive endoderm.H1-ESC.protocol variations.Dekker 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFI49A9Z1K.chr22.35040000-35050000.chr22.35220000-35230000 CUI 4DN Loop (Entity type)
in situ Hi-C on HCT116 cells (containing AID-tagged WAPL) auxin treated.HCT116 - perturbed.WAPL Knockdown.Cremins 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFILP7BD5H.chr13.20960000-21000000.chr13.21060000-21100000 CUI 4DN Loop (Entity type)
in situ Hi-C on HFFc6 cells.HFFc6.protocol variations.Dekker 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFIQ48U7UJ.chr7.46710000-46720000.chr7.47250000-47260000 CUI 4DN Loop (Entity type)
Micro-C on H1-ESC cells.H1-ESC.Dekker 4DN File (Entity type)	File has loop Knowledge Graph Relation (Entity type)	4DNL:4DNFI3RMWQ85.chr12.7220000-7225000.chr12.7635000-7640000 CUI 4DN Loop (Entity type)

in situ Hi-C on HFFc6 cells.HFFc6.protocol variations.Dekker
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFIQ48U7UJ.chr3.127650000-127655000.chr3.127960000-127965000 CUI
4DN Loop (Entity type)

in situ Hi-C on HCT116 cells (containing AID-tagged WAPL) auxin treated.HCT116 - perturbed.WAPL Knockdown.Cremins
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFILP7BD5H.chr16.48700000-48740000.chr16.49100000-49140000 CUI
4DN Loop (Entity type)

in situ Hi-C on H1-ESC cells.H1-ESC.conservative calls.Cremins
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFIEEF14ST.chr8.14450000-14470000.chr8.14850000-14870000 CUI
4DN Loop (Entity type)

in situ Hi-C on HFFc6 cells.HFFc6.protocol variations.Dekker
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFIQ48U7UJ.chr5.136685000-136690000.chr5.136770000-136775000 CUI
4DN Loop (Entity type)

in situ Dnase Hi-C on fetal heart samples.Heart_Tissue.Clustered
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFIAL6BHR2.chr8.117600000-117625000.chr8.118075000-118100000 CUI
4DN Loop (Entity type)

in situ Hi-C on HCT116 cells (containing AID-tagged WAPL) auxin treated.HCT116 - perturbed.WAPL Knockdown.Cremins
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFILP7BD5H.chr4.41680000-41720000.chr4.41860000-41900000 CUI
4DN Loop (Entity type)

Micro-C on H1 cells differentiated to definitive endoderm.H1-ESC.protocol variations.Dekker
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFI49A9Z1K.chr22.35040000-35050000.chr22.35220000-35230000 CUI
4DN Loop (Entity type)

in situ Hi-C on HCT116 cells (containing AID-tagged WAPL) auxin treated.HCT116 - perturbed.WAPL Knockdown.Cremins
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFILP7BD5H.chr13.20960000-21000000.chr13.21060000-21100000 CUI
4DN Loop (Entity type)

in situ Hi-C on HFFc6 cells.HFFc6.protocol variations.Dekker
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFIQ48U7UJ.chr7.46710000-46720000.chr7.47250000-47260000 CUI
4DN Loop (Entity type)

Micro-C on H1-ESC cells.H1-ESC.Dekker
4DN File (Entity type)
File has loop
Knowledge Graph Relation (Entity type)
4DNL:4DNFI3RMWQ85.chr12.7220000-7225000.chr12.7635000-7640000 CUI
4DN Loop (Entity type)

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