0ba0bfeb-ad1d-4bf7-8789-da4de93de8be (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNES9J6QJQS

Description:4DNES9J6QJQS: Liquified Chromatin Hi-C on K562 cells - Purified nuclei, pre-digestion with buffer for 4 hours, digestion with HindIII These are biological replicate in which we performed Liquid chromatin Hi-C on K652 cells. Nuclei were purified then were incubated with just digestion buffer for 4 hours before performing Hi-C 2.0

Creation Time:2019-11-04T00:00:00

Abbreviation:4DNES9J6QJQS

Results found

Linked to

	Label	Description
	ae6c618f-7a8c-441e-a886-e30bbbe591da Project (Entity type)	CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...
	1032c021-c18a-49ab-90d2-fd2cc5a8e1b7 Subject (Entity type)	A subject from 4DN produced as part of the 91b694c3 f4d7 4ddd 8278 16f94e15c1c5 project
	43c5fb2a-68a7-43dc-b320-64be93c17d14 Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNES9J6QJQS
	30980cbd-c43b-46f2-83cd-a7dda1bf8093 Collection (Entity type)	Biological replicate 2, Technical replicate 1 of 4DNES9J6QJQS
	4DNFIPAF4PYT.hic File (Entity type)	A 3.18 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIRB1EYHY.mcool File (Entity type)	A 2.11 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIFIHO4NJ.pairs.gz File (Entity type)	A 5.66 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIDOI4EXW.bw File (Entity type)	A 4.08 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIXGJ1F53.bw File (Entity type)	A 212 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIZAKTLWE.bed.gz File (Entity type)	A 140 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

ae6c618f-7a8c-441e-a886-e30bbbe591da

Project (Entity type)

CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...

1032c021-c18a-49ab-90d2-fd2cc5a8e1b7

Subject (Entity type)

A subject from 4DN produced as part of the 91b694c3 f4d7 4ddd 8278 16f94e15c1c5 project

43c5fb2a-68a7-43dc-b320-64be93c17d14

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNES9J6QJQS

30980cbd-c43b-46f2-83cd-a7dda1bf8093

Collection (Entity type)

Biological replicate 2, Technical replicate 1 of 4DNES9J6QJQS

4DNFIPAF4PYT.hic

File (Entity type)

A 3.18 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIRB1EYHY.mcool

File (Entity type)

A 2.11 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIFIHO4NJ.pairs.gz

File (Entity type)

A 5.66 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIDOI4EXW.bw

File (Entity type)

A 4.08 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIXGJ1F53.bw

File (Entity type)

A 212 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIZAKTLWE.bed.gz

File (Entity type)

A 140 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

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