557544c1-3d14-4a39-bebd-c7693f7d9656 (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNESVL4N9CD

Description:4DNESVL4N9CD: Hi-C on H1-DE cells - protocol variations - Formaldehyde, DpnII, H1-DE (Tier 1) Hi-C experiments on H1 derived endoderm, differentiated using the 4DN protocol. Cells crosslinked with FA and digested with DpnII.

Creation Time:2021-01-04T00:00:00

Abbreviation:4DNESVL4N9CD

Results found

Linked to

	Label	Description
	ae6c618f-7a8c-441e-a886-e30bbbe591da Project (Entity type)	CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...
	68172441-97c4-40cc-b73f-d0f5dbc5cc05 Subject (Entity type)	A subject from 4DN produced as part of the ee89349a 1d43 4048 9142 bc750f0f3b32 project
	ce622d76-9d57-4e47-b894-d40f74d943f8 Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNESVL4N9CD
	4DNFIH7CV4FY.txt.gz File (Entity type)	A 4.89 MB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project
	4DNFIGHNHBNT.bw File (Entity type)	A 322 KB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project
	4DNFI2J1ODWB.hic File (Entity type)	A 13.6 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIQ1QIO62.bw File (Entity type)	A 8.47 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFITOGO7VA.txt.gz File (Entity type)	A 1.05 MB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project
	4DNFI7V4D39Q.pairs.gz File (Entity type)	A 32.0 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFINFQV712.mcool File (Entity type)	A 9.31 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

ae6c618f-7a8c-441e-a886-e30bbbe591da

Project (Entity type)

CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...

68172441-97c4-40cc-b73f-d0f5dbc5cc05

Subject (Entity type)

A subject from 4DN produced as part of the ee89349a 1d43 4048 9142 bc750f0f3b32 project

ce622d76-9d57-4e47-b894-d40f74d943f8

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNESVL4N9CD

4DNFIH7CV4FY.txt.gz

File (Entity type)

A 4.89 MB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

4DNFIGHNHBNT.bw

File (Entity type)

A 322 KB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

4DNFI2J1ODWB.hic

File (Entity type)

A 13.6 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIQ1QIO62.bw

File (Entity type)

A 8.47 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFITOGO7VA.txt.gz

File (Entity type)

A 1.05 MB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

4DNFI7V4D39Q.pairs.gz

File (Entity type)

A 32.0 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFINFQV712.mcool

File (Entity type)

A 9.31 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.