a4e0be64-97db-4d0a-96fd-c24a488cace5 (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNESQICH2XW

Description:4DNESQICH2XW: Liquified Chromatin Hi-C on K562 cells - Purified nuclei, pre-digestion with DpnII for 4 hours, digestion with HindIII These are biological replicate in which we performed Liquid chromatin Hi-C on K652 cells. Nuclei were purified then were digested with DpnII for 4 hours before performing Hi-C 2.0

Creation Time:2019-11-04T00:00:00

Abbreviation:4DNESQICH2XW

Results found

Linked to

	Label	Description
	ae6c618f-7a8c-441e-a886-e30bbbe591da Project (Entity type)	CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...
	1032c021-c18a-49ab-90d2-fd2cc5a8e1b7 Subject (Entity type)	A subject from 4DN produced as part of the 91b694c3 f4d7 4ddd 8278 16f94e15c1c5 project
	12a6da94-c02d-42cf-9b84-faf526c596c5 Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNESQICH2XW
	b38c86b5-c860-4ce9-ba4d-3bb03ce75636 Collection (Entity type)	Biological replicate 2, Technical replicate 1 of 4DNESQICH2XW
	4DNFIMIYU8VC.mcool File (Entity type)	A 4.76 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFI81K6IN5.bw File (Entity type)	A 4.28 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIWIYYNQ5.hic File (Entity type)	A 7.22 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFICOAY48V.bw File (Entity type)	A 212 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFICYFAQOX.bed.gz File (Entity type)	A 325 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIXKPOGGK.pairs.gz File (Entity type)	A 10.3 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

ae6c618f-7a8c-441e-a886-e30bbbe591da

Project (Entity type)

CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...

1032c021-c18a-49ab-90d2-fd2cc5a8e1b7

Subject (Entity type)

A subject from 4DN produced as part of the 91b694c3 f4d7 4ddd 8278 16f94e15c1c5 project

12a6da94-c02d-42cf-9b84-faf526c596c5

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNESQICH2XW

b38c86b5-c860-4ce9-ba4d-3bb03ce75636

Collection (Entity type)

Biological replicate 2, Technical replicate 1 of 4DNESQICH2XW

4DNFIMIYU8VC.mcool

File (Entity type)

A 4.76 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFI81K6IN5.bw

File (Entity type)

A 4.28 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIWIYYNQ5.hic

File (Entity type)

A 7.22 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFICOAY48V.bw

File (Entity type)

A 212 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFICYFAQOX.bed.gz

File (Entity type)

A 325 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIXKPOGGK.pairs.gz

File (Entity type)

A 10.3 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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