b879304b-228f-4af4-bba4-addbc0d85acb (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNESL3LFLGI

Description:4DNESL3LFLGI: low coverage parameterization - 0.5% SDS in H2O, 62ºC, 10' + long nuclei prep Low sequencing coverage replicates of H3K4me3 PLAC-seq on GM12878 cells for parameter testing - 0.5% SDS in water, 62ºC, 10 min (Step 12 in protocol) and Covaris nuclei prep (Covaris truChIP™ Chromatin Shearing Kit, section B. Nuclei Preparation, step 1-10) (Step 30 in protocol)

Creation Time:2019-11-26T00:00:00

Abbreviation:4DNESL3LFLGI

Results found

Linked to

	Label	Description
	4871e338-b07d-4665-a00a-357648e5bad6 Project (Entity type)	SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH https://projectreporter.nih.gov/project_description.cfm?pr...
	c9affe27-c09e-46be-ac1c-a614df02587a Subject (Entity type)	A subject from 4DN produced as part of the eda54849 45e6 4f96 82de fea642bc194b project
	de587d6d-38c2-4ecb-a143-e7a18ff27d7b Collection (Entity type)	Biological replicate 2, Technical replicate 1 of 4DNESL3LFLGI
	a6336d9b-a392-4f49-b01d-35cbda69a28e Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNESL3LFLGI
	4DNFIHMX5V5O.hic File (Entity type)	A 347 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIKBP5S1J.pairs.gz File (Entity type)	A 293 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIF4YWBUX.mcool File (Entity type)	A 165 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4871e338-b07d-4665-a00a-357648e5bad6

Project (Entity type)

SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH https://projectreporter.nih.gov/project_description.cfm?pr...

c9affe27-c09e-46be-ac1c-a614df02587a

Subject (Entity type)

A subject from 4DN produced as part of the eda54849 45e6 4f96 82de fea642bc194b project

de587d6d-38c2-4ecb-a143-e7a18ff27d7b

Collection (Entity type)

Biological replicate 2, Technical replicate 1 of 4DNESL3LFLGI

a6336d9b-a392-4f49-b01d-35cbda69a28e

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNESL3LFLGI

4DNFIHMX5V5O.hic

File (Entity type)

A 347 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIKBP5S1J.pairs.gz

File (Entity type)

A 293 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIF4YWBUX.mcool

File (Entity type)

A 165 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

DISPLAY PER PAGE

CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.