deae52ea-a402-405d-980f-981de9cc7898 (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNESZ1XLHNJ

Description:4DNESZ1XLHNJ: low coverage parameterization - 0.5% SDS in H2O, 62ºC, 10' + long nuclei prep Low sequencing coverage replicates of H3K27ac PLAC-seq on GM12878 cells for parameter testing - 0.5% SDS in water, 62ºC, 10 min (Step 12 in protocol) and Covaris nuclei prep (Covaris truChIP™ Chromatin Shearing Kit, section B. Nuclei Preparation, step 1-10) (Step 30 in protocol)

Creation Time:2019-11-26T00:00:00

Abbreviation:4DNESZ1XLHNJ

Results found

Linked to

	Label	Description
	4871e338-b07d-4665-a00a-357648e5bad6 Project (Entity type)	SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH https://projectreporter.nih.gov/project_description.cfm?pr...
	c9affe27-c09e-46be-ac1c-a614df02587a Subject (Entity type)	A subject from 4DN produced as part of the eda54849 45e6 4f96 82de fea642bc194b project
	f38045fb-dd3b-4921-bee9-0256655a1d74 Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNESZ1XLHNJ
	bb54d963-5335-4125-8563-2bdb876d9940 Collection (Entity type)	Biological replicate 2, Technical replicate 1 of 4DNESZ1XLHNJ
	4DNFIOUS2AUO.mcool File (Entity type)	A 154 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFINQBQU6O.pairs.gz File (Entity type)	A 270 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFICKWWRQC.hic File (Entity type)	A 325 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4871e338-b07d-4665-a00a-357648e5bad6

Project (Entity type)

SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH https://projectreporter.nih.gov/project_description.cfm?pr...

c9affe27-c09e-46be-ac1c-a614df02587a

Subject (Entity type)

A subject from 4DN produced as part of the eda54849 45e6 4f96 82de fea642bc194b project

f38045fb-dd3b-4921-bee9-0256655a1d74

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNESZ1XLHNJ

bb54d963-5335-4125-8563-2bdb876d9940

Collection (Entity type)

Biological replicate 2, Technical replicate 1 of 4DNESZ1XLHNJ

4DNFIOUS2AUO.mcool

File (Entity type)

A 154 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFINQBQU6O.pairs.gz

File (Entity type)

A 270 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFICKWWRQC.hic

File (Entity type)

A 325 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

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