597fba67-cb28-43db-9f06-73339a1b1ba4 (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNESMBE39SA

Description:4DNESMBE39SA: low coverage parameterization - 0.3% SDS in 1xNEB2, 42ºC, 10'+ long nuclei prep Low sequencing coverage replicates of H3K4me3 PLAC-seq on GM12878 cells for parameter testing - 0.3% SDS in 1xNebuffer2, 42ºC, 10 min (Step 12 in protocol) and Covaris nuclei prep (Covaris truChIP™ Chromatin Shearing Kit, section B. Nuclei Preparation, step 1-10) (Step 30 in protocol)

Creation Time:2019-11-26T00:00:00

Abbreviation:4DNESMBE39SA

Results found

Linked to

	Label	Description
	4871e338-b07d-4665-a00a-357648e5bad6 Project (Entity type)	SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH https://projectreporter.nih.gov/project_description.cfm?pr...
	c9affe27-c09e-46be-ac1c-a614df02587a Subject (Entity type)	A subject from 4DN produced as part of the eda54849 45e6 4f96 82de fea642bc194b project
	1337228d-8084-442f-8e55-2c379b1a0811 Collection (Entity type)	Biological replicate 2, Technical replicate 1 of 4DNESMBE39SA
	cd4e85b3-5be7-408c-9fc5-93a898c88650 Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNESMBE39SA
	4DNFIG79KVMF.hic File (Entity type)	A 295 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFILXPPI6D.mcool File (Entity type)	A 142 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIZW8AAG9.pairs.gz File (Entity type)	A 272 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4871e338-b07d-4665-a00a-357648e5bad6

Project (Entity type)

SAN DIEGO CENTER FOR 4D NUCLEOME RESEARCH https://projectreporter.nih.gov/project_description.cfm?pr...

c9affe27-c09e-46be-ac1c-a614df02587a

Subject (Entity type)

A subject from 4DN produced as part of the eda54849 45e6 4f96 82de fea642bc194b project

1337228d-8084-442f-8e55-2c379b1a0811

Collection (Entity type)

Biological replicate 2, Technical replicate 1 of 4DNESMBE39SA

cd4e85b3-5be7-408c-9fc5-93a898c88650

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNESMBE39SA

4DNFIG79KVMF.hic

File (Entity type)

A 295 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFILXPPI6D.mcool

File (Entity type)

A 142 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIZW8AAG9.pairs.gz

File (Entity type)

A 272 MB file from 4DN produced from OBI:0001848 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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