single-nucleus RNA sequencing assay (Assay Type)

Synonyms:single nuclei RNA sequencing, snRNA-seq, sNuc-seq

Description:A RNA-seq assay that is used for profiling gene expression in individual nuclei with optimized next generation sequencing (NGS) technologies. This allows the RNA-seq profiling of cell types that are more vulnerable to the tissue dissociation process, and that are therefore underrepresented in the final data set in single cell sequencing.

Results found

Linked to

	Label	Description
	Bei CO2-15 W165-CGCGCACTTA-AGAATACAGG S23 L001 I1 001.fastq.gz File (Entity type)	A 376 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	Bei CO2-8 B011-A-501-GCACTGAGAA-TTCACGCATA S16 L002 I1 001.fastq.gz File (Entity type)	A 462 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	Bei CO1 RNA 6-TAACGCGTGA-GAAGTTAGGG S6 L001 I2 001.fastq.gz File (Entity type)	A 604 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	Bei CO1 RNA 3-CACTACGAAA-ATCAGTCTAA S3 L001 R1 001.fastq.gz File (Entity type)	A 3.54 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	Bei CO2-13 B012-A-101-TCCGTTGGAT-GCGAGAACGT S21 L001 I2 001.fastq.gz File (Entity type)	A 841 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	BUKMAP 20200205D 10X-R L004 R1 001.fastq.gz File (Entity type)	A 2.87 GB file from HuBMAP produced from OBI:0003109 as part of the University of California San Diego TMC project
	Bei CO2-12 B012-A-401-TTCTCGATGA-GTGCCCGACA S20 L003 R1 001.fastq.gz File (Entity type)	A 2.42 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	Bei CO1-7 B010-A-301-TCCCAAGGGT-AAAGGTAGTA S7 L001 I2 001.fastq.gz File (Entity type)	A 83.7 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	Bei CO1 RNA 2-GTGGATCAAA-CAGGGTTGGC S2 L001 R2 001.fastq.gz File (Entity type)	A 5.19 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project
	B006-A-402-gex S6 L001 R2 001.fastq.gz File (Entity type)	A 1.37 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

Bei CO2-15 W165-CGCGCACTTA-AGAATACAGG S23 L001 I1 001.fastq.gz

File (Entity type)

A 376 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

Bei CO2-8 B011-A-501-GCACTGAGAA-TTCACGCATA S16 L002 I1 001.fastq.gz

File (Entity type)

A 462 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

Bei CO1 RNA 6-TAACGCGTGA-GAAGTTAGGG S6 L001 I2 001.fastq.gz

File (Entity type)

A 604 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

Bei CO1 RNA 3-CACTACGAAA-ATCAGTCTAA S3 L001 R1 001.fastq.gz

File (Entity type)

A 3.54 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

Bei CO2-13 B012-A-101-TCCGTTGGAT-GCGAGAACGT S21 L001 I2 001.fastq.gz

File (Entity type)

A 841 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

BUKMAP 20200205D 10X-R L004 R1 001.fastq.gz

File (Entity type)

A 2.87 GB file from HuBMAP produced from OBI:0003109 as part of the University of California San Diego TMC project

Bei CO2-12 B012-A-401-TTCTCGATGA-GTGCCCGACA S20 L003 R1 001.fastq.gz

File (Entity type)

A 2.42 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

Bei CO1-7 B010-A-301-TCCCAAGGGT-AAAGGTAGTA S7 L001 I2 001.fastq.gz

File (Entity type)

A 83.7 MB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

Bei CO1 RNA 2-GTGGATCAAA-CAGGGTTGGC S2 L001 R2 001.fastq.gz

File (Entity type)

A 5.19 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

B006-A-402-gex S6 L001 R2 001.fastq.gz

File (Entity type)

A 1.37 GB file from HuBMAP produced from OBI:0003109 as part of the Stanford TMC project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.