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The Common Fund’s Library of Integrated Network-based Cellular Signatures (LINCS) program developed a library that catalogs changes that occur when different types of cells are exposed to a variety of agents that disrupt normal cellular functions, called “perturbagens.” This libr...read more

Metadata and Processed Data Files

C2M2

1 Current File(s) | 10 Archived File(s)

1 Current File(s)

10 Archived File(s)

Modified 9/18/2023

Current

Filename:
datapackage.zip
Creator: LINCS
Filesize: 169.2 Mb
Date Modified: 9/18/2023
DCC Approved:
DRC Approved:

Archived

Filename:
datapackage.zip
Creator: LINCS
Filesize: 166.0 Mb
Date Modified: 6/15/2023
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 166.7 Mb
Date Modified: 3/21/2023
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 166.2 Mb
Date Modified: 12/2/2022
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 165.5 Mb
Date Modified: 9/14/2022
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 164.2 Mb
Date Modified: 6/20/2022
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 171.1 Mb
Date Modified: 4/14/2022
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 171.1 Mb
Date Modified: 1/11/2022
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 131.1 Mb
Date Modified: 9/29/2021
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 141.3 Mb
Date Modified: 6/2/2021
DCC Approved:
DRC Approved:

Filename:
datapackage.zip
Creator: LINCS
Filesize: 28.1 Mb
Date Modified: 3/24/2021
DCC Approved:
DRC Approved:

XMT

6 Current File(s) | 4 Archived File(s)

6 Current File(s)

4 Archived File(s)

Modified 12/19/2024

Current

Filename:
rummageo_chemical_perturbations.gmt
Creator: LINCS
Filesize: 31.0 Mb
Date Modified: 12/19/2024
DCC Approved:
DRC Approved:

Filename:
rummageo_gene_perturbations.gmt
Creator: LINCS
Filesize: 25.6 Mb
Date Modified: 12/19/2024
DCC Approved:
DRC Approved:

Filename:
l1000_cp.gmt
Creator: LINCS
Filesize: 2.1 Gb
Date Modified: 12/11/2024
DCC Approved:
DRC Approved:

Filename:
LINCS_L1000_Consensus_Median_Signatures.gmt
Creator: LINCS
Filesize: 19.9 Mb
Date Modified: 9/14/2024
DCC Approved:
DRC Approved:

Filename:
LINCS_L1000_CRISPR_KO_Consensus_Sigs.gmt
Creator: LINCS
Filesize: 14.9 Mb
Date Modified: 12/13/2022
DCC Approved:
DRC Approved:

Filename:
LINCS_L1000_Chem_Pert_Consensus_Sigs.gmt
Creator: LINCS
Filesize: 15.6 Mb
Date Modified: 12/13/2022
DCC Approved:
DRC Approved:

Archived

Filename:
LINCS_L1000_Ligand_Perturbations_up.gmt
Creator: LINCS
Filesize: 87.4 Kb
Date Modified: 6/6/2022
DCC Approved:
DRC Approved:

Filename:
LINCS_L1000_Chem_Pert_up.gmt
Creator: LINCS
Filesize: 15.5 Mb
Date Modified: 6/6/2022
DCC Approved:
DRC Approved:

Filename:
LINCS_L1000_Ligand_Perturbations_down.gmt
Creator: LINCS
Filesize: 93.0 Kb
Date Modified: 6/6/2022
DCC Approved:
DRC Approved:

Filename:
LINCS_L1000_Chem_Pert_down.gmt
Creator: LINCS
Filesize: 13.4 Mb
Date Modified: 6/6/2022
DCC Approved:
DRC Approved:

Attribute Tables

4 Current File(s) | 0 Archived File(s)

4 Current File(s)

0 Archived File(s)

Modified 3/29/2024

Current

Filename:
LINCS_L1000_CRISPR_KO_Perturbation_Consensus_CD_Sigs.h5
Creator: LINCS
Filesize: 317.5 Mb
Date Modified: 3/29/2024
DCC Approved:
DRC Approved:

Filename:
LINCS_L1000_Chemical_Perturbation_Consensus_CD_Sigs.h5
Creator: LINCS
Filesize: 1.4 Gb
Date Modified: 3/28/2024
DCC Approved:
DRC Approved:

Filename:
LINCS L1000 Chemical Perturbations
Creator: LINCS
Filesize: 33.6 Gb
Date Modified: 6/23/2021
DCC Approved:
DRC Approved:

Filename:
LINCS L1000 CRISPR Perturbations
Creator: LINCS
Filesize: 6.5 Gb
Date Modified: 6/23/2021
DCC Approved:
DRC Approved:

Archived

None Available

Knowledge Graph Assertions

1 Current File(s) | 1 Archived File(s)

1 Current File(s)

1 Archived File(s)

Modified 5/8/2024

Current

Filename:
LINCS.zip
Creator: LINCS
Filesize: 11.6 Mb
Date Modified: 5/8/2024
DCC Approved:
DRC Approved:

Archived

Filename:
LINCS.edges.csv
Creator: LINCS
Filesize: 54.6 Mb
Date Modified: 10/26/2023
DCC Approved:
DRC Approved:

Interoperability Assets

ETL Scripts

1 Current File(s) | 2 Archived File(s)

1 Current File(s)

2 Archived File(s)

Modified 11/23/2024

Current

Name:
LINCS_C2M2_Metadata_ETL_Scripts
Creator: LINCS
Date Modified: 11/23/2024
DCC Approved:
DRC Approved:

Archived

Name:
build_file_lincs2021.py
Creator: LINCS
Date Modified: 6/23/2021
DCC Approved:
DRC Approved:

Name:
process_mcf10a_c2m2.py
Creator: LINCS
Date Modified: 5/22/2022
DCC Approved:
DRC Approved:

API Specifications

7 Current File(s) | 1 Archived File(s)

7 Current File(s)

1 Archived File(s)

Modified 1/31/2023

Current

Name:
Enrichr (SmartAPI)
Creator: LINCS
Date Modified: 1/31/2023
DCC Approved:
DRC Approved:

Name:
FAIRshake API v2 (SmartAPI)
Creator: LINCS
Date Modified: 4/5/2022
DCC Approved:
DRC Approved:

Name:
Harmonizome (SmartAPI)
Creator: LINCS
Date Modified: 1/31/2023
DCC Approved:
DRC Approved:

Name:
L1000CDS2 (SmartAPI)
Creator: LINCS
Date Modified: 1/31/2023
DCC Approved:
DRC Approved:

Name:
L1000FWD (SmartAPI)
Creator: LINCS
Date Modified: 1/31/2023
DCC Approved:
DRC Approved:

Name:
SigCom LINCS Data (SmartAPI)
Creator: LINCS
Date Modified: 5/22/2022
DCC Approved:
DRC Approved:

Name:
SigCom LINCS Metadata (SmartAPI)
Creator: LINCS
Date Modified: 5/22/2022
DCC Approved:
DRC Approved:

Archived

Name:
FAIRshake (SmartAPI)
Creator: LINCS
Date Modified: 8/7/2018
DCC Approved:
DRC Approved:

Entity Pages

4 Current File(s) | 0 Archived File(s)

4 Current File(s)

0 Archived File(s)

Modified 3/8/2024

Current

Name:
Drugmonizome Drug Pages
Template | Example
Creator: LINCS
Date Modified: 3/8/2024
DCC Approved:
DRC Approved:

Name:
Harmonizome Gene Pages
Template | Example
Creator: LINCS
Date Modified: 3/8/2024
DCC Approved:
DRC Approved:

Name:
SigCom LINCS Drug Pages
Template | Example
Creator: LINCS
Date Modified: 3/8/2024
DCC Approved:
DRC Approved:

Name:
SigCom LINCS Gene Pages
Template | Example
Creator: LINCS
Date Modified: 3/8/2024
DCC Approved:
DRC Approved:

Archived

None Available

PWB Metanodes

3 Current File(s) | 1 Archived File(s)

3 Current File(s)

1 Archived File(s)

Modified 2/26/2024

Current

Name:
LINCS L1000 Reverse Search
Creator: LINCS
Date Modified: 7/19/2023
DCC Approved:
DRC Approved:

Name:
SigCom LINCS Gene Set Search Results
Creator: LINCS
Date Modified: 2/7/2024
DCC Approved:
DRC Approved:

Name:
SigCom LINCS Signature Search Results
Creator: LINCS
Date Modified: 2/7/2024
DCC Approved:
DRC Approved:

Archived

Name:
LINCS L1000 Reverse Search
Creator: LINCS
Date Modified: 2/26/2024
DCC Approved:
DRC Approved:

Chatbot Specifications

0 Available Files

Current

None Available

Archived

None Available

Apps URLs

1 Current File(s) | 0 Archived File(s)

1 Current File(s)

0 Archived File(s)

Modified 6/11/2024

Current

Name:
LINCS Tools Marketplace
Creator: LINCS
Date Modified: 6/11/2024
DCC Approved:
DRC Approved:

Archived

None Available

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LINCS

Metadata and Processed Data Files

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