LDG-1369 (Collection)

Id Namespace:

Library of Integrated Network-Based Cellular Signatures

Identifier Namespace (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Persistent Id:https://lincsportal.ccs.miami.edu/datasets/view/LDG-1369

Has Time Series Data:false

Description:MCF10A cells were grown in standard 8 well MEMA for 72h and then fixed using 2% paraformaldehyde. Cells were stained with DAPI (nuclei), CellMask (cytoplasm) KRT5 (basal lineage) and KRT19 (luminal lineage). The cells were imaged on a Nikon HCA microscopy system, segmented with Cell Profiler, normalized using RUV and lowess using the spatial residuals as controls, and analyzed to identify microenvironment conditions that altered phenotypes of interest.

Creation Time:2016-11-10T00:00:00+00:00

Results found

Linked to

	Label	Description
	Breast Anatomy (Entity type)	The upper ventral region of the torso of an organism.
	LCL-2085 Subject (Entity type)	A subject from LINCS produced as part of the LINCS project
	Homo sapiens Taxonomy (Entity type)	man
	LINCS MCF10A project Project (Entity type)	The NIH LINCS Consortium has been working on a Common Project to systematically characterize human c...
	LDG-1369:LCL-2085 Biosample (Entity type)	A biosample from LINCS produced as part of the LINCS MCF10A project project
	LDS-1450.tar.gz File (Entity type)	A 23.4 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project
	LDS-1448.tar.gz File (Entity type)	A 13.6 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project
	LDS-1449.tar.gz File (Entity type)	A 21.8 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project
	LDS-1447.tar.gz File (Entity type)	A 855 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project

Breast

Anatomy (Entity type)

The upper ventral region of the torso of an organism.

LCL-2085

Subject (Entity type)

A subject from LINCS produced as part of the LINCS project

Homo sapiens

Taxonomy (Entity type)

man

LINCS MCF10A project

Project (Entity type)

The NIH LINCS Consortium has been working on a Common Project to systematically characterize human c...

LDG-1369:LCL-2085

Biosample (Entity type)

A biosample from LINCS produced as part of the LINCS MCF10A project project

LDS-1450.tar.gz

File (Entity type)

A 23.4 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project

LDS-1448.tar.gz

File (Entity type)

A 13.6 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project

LDS-1449.tar.gz

File (Entity type)

A 21.8 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project

LDS-1447.tar.gz

File (Entity type)

A 855 MB file from LINCS produced from OBI:0002966 as part of the LINCS MCF10A project project

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@CFDE Workbench 2025

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

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