a775a025-3207-4364-81fc-c480142f15b2 (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNESCQRIZ7D

Description:4DNESCQRIZ7D: Liquified Chromatin Hi-C on K562 cells - Purified nuclei, pre-digestion with DpnII for 2 hours, digestion with DpnII These are biological replicate in which we performed Liquid chromatin Hi-C on K652 cells. Nuclei were purified then were digested with DpnII for 2 hours before performing Hi-C 2.0

Creation Time:2019-11-04T00:00:00

Abbreviation:4DNESCQRIZ7D

Results found

Linked to

	Label	Description
	ae6c618f-7a8c-441e-a886-e30bbbe591da Project (Entity type)	CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...
	1032c021-c18a-49ab-90d2-fd2cc5a8e1b7 Subject (Entity type)	A subject from 4DN produced as part of the 91b694c3 f4d7 4ddd 8278 16f94e15c1c5 project
	1920a326-4cae-47b9-8f89-048cf452636b Collection (Entity type)	Biological replicate 2, Technical replicate 1 of 4DNESCQRIZ7D
	c3051246-4cfd-45c9-9b4e-653e46461884 Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNESCQRIZ7D
	4DNFIBGWGJ42.mcool File (Entity type)	A 3.66 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIK77G3ZP.bw File (Entity type)	A 213 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIWILLD6C.hic File (Entity type)	A 5.62 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIH2YF3YD.bw File (Entity type)	A 8.44 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFI57BEK7X.bed.gz File (Entity type)	A 274 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIZKO3EOE.pairs.gz File (Entity type)	A 7.29 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

ae6c618f-7a8c-441e-a886-e30bbbe591da

Project (Entity type)

CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...

1032c021-c18a-49ab-90d2-fd2cc5a8e1b7

Subject (Entity type)

A subject from 4DN produced as part of the 91b694c3 f4d7 4ddd 8278 16f94e15c1c5 project

1920a326-4cae-47b9-8f89-048cf452636b

Collection (Entity type)

Biological replicate 2, Technical replicate 1 of 4DNESCQRIZ7D

c3051246-4cfd-45c9-9b4e-653e46461884

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNESCQRIZ7D

4DNFIBGWGJ42.mcool

File (Entity type)

A 3.66 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIK77G3ZP.bw

File (Entity type)

A 213 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIWILLD6C.hic

File (Entity type)

A 5.62 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIH2YF3YD.bw

File (Entity type)

A 8.44 MB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFI57BEK7X.bed.gz

File (Entity type)

A 274 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIZKO3EOE.pairs.gz

File (Entity type)

A 7.29 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

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