2a68c55a-b02f-4679-8f20-890e014d718c (Collection)

Id Namespace:

4D Nucleome

Identifier Namespace (Entity type)

Dcc Asset:

250924 c2m2 4dn sub.zip

Processed File (Entity type)

Dcc:

4DN

DCC (Entity type)

Persistent Id:https://data.4dnucleome.org/4DNESCOQ5YRS

Description:4DNESCOQ5YRS: Hi-C on H1-DE cells - protocol variations - Formaldehyde, DpnII Hi-C experiments on H1 derived endoderm, differentiated using the protocol from Rene Maehr lab. Cells crosslinked with FA and digested with DpnII.

Creation Time:2021-01-04T00:00:00

Abbreviation:4DNESCOQ5YRS

Results found

Linked to

	Label	Description
	ae6c618f-7a8c-441e-a886-e30bbbe591da Project (Entity type)	CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...
	44b0b763-065f-40f3-8432-8bd66d9f1be3 Subject (Entity type)	A subject from 4DN produced as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project
	3b8562d5-3a09-4749-ae49-9597f4a12cf9 Collection (Entity type)	Biological replicate 2, Technical replicate 1 of 4DNESCOQ5YRS
	2e5dd7d1-1fbb-4dfa-bcab-70aee32cd3b2 Collection (Entity type)	Biological replicate 1, Technical replicate 1 of 4DNESCOQ5YRS
	4DNFIJWBWE41.hic File (Entity type)	A 20.7 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIEB8OCEM.bw File (Entity type)	A 322 KB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project
	4DNFIW8IXCX1.mcool File (Entity type)	A 14.3 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIW89DNDQ.bed.gz File (Entity type)	A 152 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIU5WDUE5.txt.gz File (Entity type)	A 4.88 MB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project
	4DNFIW5Z7XD3.bedpe.gz File (Entity type)	A 716 KB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

ae6c618f-7a8c-441e-a886-e30bbbe591da

Project (Entity type)

CENTER FOR 3D STRUCTURE AND PHYSICS OF THE GENOME https://projectreporter.nih.gov/project_descriptio...

44b0b763-065f-40f3-8432-8bd66d9f1be3

Subject (Entity type)

A subject from 4DN produced as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

3b8562d5-3a09-4749-ae49-9597f4a12cf9

Collection (Entity type)

Biological replicate 2, Technical replicate 1 of 4DNESCOQ5YRS

2e5dd7d1-1fbb-4dfa-bcab-70aee32cd3b2

Collection (Entity type)

Biological replicate 1, Technical replicate 1 of 4DNESCOQ5YRS

4DNFIJWBWE41.hic

File (Entity type)

A 20.7 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIEB8OCEM.bw

File (Entity type)

A 322 KB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

4DNFIW8IXCX1.mcool

File (Entity type)

A 14.3 GB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIW89DNDQ.bed.gz

File (Entity type)

A 152 KB file from 4DN produced from OBI:0003306 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIU5WDUE5.txt.gz

File (Entity type)

A 4.88 MB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

4DNFIW5Z7XD3.bedpe.gz

File (Entity type)

A 716 KB file from 4DN produced from OBI:0003306 as part of the ae6c618f 7a8c 441e a886 e30bbbe591da project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

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