16s ribosomal gene sequencing assay (Assay Type)

Synonyms:16S rRNA sequencing assay

Description:An amplicon sequencing assay in which the amplicon is derived from universal primers used to amplify the 16S ribosomal RNA gene from isolate bacterial genomic DNA or metagenomic DNA from a microbioal community. Resulting sequences are compared to reference 16S sequence databases to identify or classify bacteria present within a given sample.

Results found

Linked to

	Label	Description
	SRR6653654 SRS2897717.filtered.fastq.bz2 File (Entity type)	A 3.59 MB file from HMP produced from OBI:0002763 as part of the T2D project
	SRR040754.fastq File (Entity type)	A 6.03 MB file from HMP produced from OBI:0002763 as part of the HHS project
	EP558013 K10 MRCD.trimmedseqset.fasta.bz2 File (Entity type)	A 1.19 MB file from HMP produced from OBI:0002763 as part of the MOMSPI project
	SRR6899921 SRS2931788 asv.fasta.bz2 File (Entity type)	A 2.54 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project
	SRR6657357 SRS2901236 summary stats.json File (Entity type)	A 1.10 KB file from HMP produced from OBI:0002763 as part of the T2D project
	SRR6692970 SRS2929162 summary stats.json File (Entity type)	A 1.06 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project
	SRR6657320 SRS2901274 dada2.biom.bz2 File (Entity type)	A 1.91 KB file from HMP produced from OBI:0002763 as part of the T2D project
	SRR6697022 SRS2932873.filtered.fastq.bz2 File (Entity type)	A 212 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project
	SRR6696328 SRS2932159 summary stats.txt File (Entity type)	A 1.45 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project
	EP491548 K40 MV1D.trimmedseqset.fasta.bz2 File (Entity type)	A 2.32 MB file from HMP produced from OBI:0002763 as part of the MOMSPI project

SRR6653654 SRS2897717.filtered.fastq.bz2

File (Entity type)

A 3.59 MB file from HMP produced from OBI:0002763 as part of the T2D project

SRR040754.fastq

File (Entity type)

A 6.03 MB file from HMP produced from OBI:0002763 as part of the HHS project

EP558013 K10 MRCD.trimmedseqset.fasta.bz2

File (Entity type)

A 1.19 MB file from HMP produced from OBI:0002763 as part of the MOMSPI project

SRR6899921 SRS2931788 asv.fasta.bz2

File (Entity type)

A 2.54 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project

SRR6657357 SRS2901236 summary stats.json

File (Entity type)

A 1.10 KB file from HMP produced from OBI:0002763 as part of the T2D project

SRR6692970 SRS2929162 summary stats.json

File (Entity type)

A 1.06 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project

SRR6657320 SRS2901274 dada2.biom.bz2

File (Entity type)

A 1.91 KB file from HMP produced from OBI:0002763 as part of the T2D project

SRR6697022 SRS2932873.filtered.fastq.bz2

File (Entity type)

A 212 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project

SRR6696328 SRS2932159 summary stats.txt

File (Entity type)

A 1.45 KB file from HMP produced from OBI:0002763 as part of the MOMSPI project

EP491548 K40 MV1D.trimmedseqset.fasta.bz2

File (Entity type)

A 2.32 MB file from HMP produced from OBI:0002763 as part of the MOMSPI project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2025

This repository is under review for potential modification in compliance with Administration directives.